GenSense

Easily analyze genome wide association data

IDBS’ GenSense provides a complete and flexible solution that accelerates and automates the analysis of data from the latest generation of high-throughput genotyping platforms. It has been specifically designed to assist researchers with quality control, analysis and annotation of genotyping arrays, and provides a highly flexible, scalable solution to work with large volume data sets in Affymetrix and Illumina data formats.

  • Perform CNV analysis of the latest generation of genotyping arrays, using Affymetrix Copy Number Workflow or PennCNV
  • Pre-defined best practice statistical analysis of case control data based on WTCCC approach
  • Powerful interactive web-based views provide easy access for any user
  • Filter, sort and prioritize single nucleotide polymorphism (SNP) genotypes from thousands of samples
  • Pre-built, flexible connectors for third party tools and scripts, e.g. R, PLINK and Perl
  • Link to phenotype data to find those SNPs most highly associated with disease and/or drug response